Sai Prakki
Researcher at Helmholtz Munich
Munich, Bavaria, Germany
Summary
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Senior🎓
Top SchoolSai Prakki is a computational biologist and researcher with 11 years' experience applying genomics and bioinformatics to infectious disease and lung single-cell research, currently working at Helmholtz Munich. He combines hands-on pipeline development in Python and R with expertise in nanopore, Illumina and PacBio sequencing to drive transmission and phylogenetic analyses of clinically relevant bacteria and to study drivers of idiopathic pulmonary fibrosis. His background spans bacterial genomics, genome assembly and annotation, pan-genome and SNP analyses, and high-throughput data management on HPC systems. Sai is experienced at translating complex genomic data into clear visualizations and reproducible workflows for cross-disciplinary teams, and has a track record of supporting outbreak studies and national surveillance efforts. Notably, he has moved between aquatic genomics and clinical pathogen genomics, giving him an uncommon perspective on comparative genomics and large-scale sequencing projects.
11 years of coding experience
9 years of employment as a software developer
Bachelors Bioinformatics, Bachelors Bioinformatics at Bharath UniversityMSc Bioinformatics, MSc Bioinformatics at Nanyang Technological University Singapore
English, Telugu, Tamil, Hindi
Github Skills (100)
rna-seq10
rna-velocity10
pathogen10
in-progress9
next-generation-sequencing9
structural-variation9
seq9
bioconductor9
bacteria9
genomics9
genetics9
bioinformatics9
genome9
sequencing9
infectious-diseases9
Programming languages (9)
Github contributions (5)
ramadatta/tute
Jul 2021 - Jun 2023
Contributions:201 pushes, 2 branches in 1 year 11 months
ramadatta/ShinyApps
Dec 2019 - Nov 2022
Contributions:61 commits, 63 pushes, 1 branch in 2 years 11 months
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