Salvador De Bartolomé
Head Of Bioinformatics
San Diego, California, United States
Summary
👤
Senior🎓
Top SchoolSalvador De Bartolomé is Head of Bioinformatics with nearly two decades of experience designing and shipping bioinformatics software and data models for proteomics, currently leading bioinformatics at Yatiri Bio in San Diego. He combines a PhD in Bioinformatics and software engineering roots to bridge algorithm development, large-scale data storage, and interactive visualization—skills honed at Scripps and CSIC where he contributed to community standards (HUPO/PSI) and MIAPE metadata tooling. Salvador has a strong publication record (32 peer-reviewed papers) and hands-on expertise in multi-omics integration, reproducible analysis, and web-based queryable repositories for proteomics experiments. Known for practical problem solving and mentoring collaborators, he has implemented production-ready libraries and R/Shiny and Java/Python applications that support complex downstream analyses like PCP and enrichment workflows. Less obvious: he pairs deep algorithmic work (probability-ratio methods, de-novo sequencing collaborations) with product-focused delivery, making him equally at home in research-driven innovation and operational bioinformatics.
11 years of coding experience
23 years of employment as a software developer
Doctor of Philosophy - PhD, Bioinformatics, Cum Laude, Doctor of Philosophy - PhD, Bioinformatics, Cum Laude at Universidad Autónoma de MadridMaster degree, Bioinformatics and Computational Biology, Master degree, Bioinformatics and Computational Biology at Universidad Complutense de Madrid
Spanish, English
Github Skills (47)
relationship10
annotations10
external-annotations10
uniprot10
cytoscape10
redundancy10
pint10
proteins10
bioinformatics9
quantitative9
database8
python8
htmlwidgets8
java8
visualize8
Programming languages (6)
Github contributions (5)
proteomicsyates/IP2_File_Transfer
Sep 2018 - Jul 2021
Giving some SSH credentials to a file server with the files of IP2, it will explore a given list of IP2 projects to get all RAW files and DTASelect files and transfer them to an external FTP site, such as MassIVE
Contributions:3 PRs, 13 pushes, 1 branch in 2 years 11 months
explorefile-serversshcredentialsftp
proteomicsyates/DTASelect2MzId
Jul 2016 - Apr 2021
Contributions:3 releases, 46 pushes, 1 branch in 4 years 9 months
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