Samuele Cancellieri
Postdoctoral Research Fellow at Centre for Molecular Medicine Norway (NCMM), University of Oslo
Oslo, Norway
Summary
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Rockstar🎓
Top SchoolSamuele Cancellieri is a bioinformatician and postdoctoral researcher with eight years of experience building and maintaining reproducible analysis pipelines for single-cell and sequencing data using C++, Python, R/Bioconductor, Bash and Nextflow. Based in Oslo, he combines hands-on software development and DevOps—contributing Bioconda recipes for tools like crispritz and crisprme—with advanced data analysis in RNA/DNA-seq, single-cell multiomics and microbiome studies. His work bridges research and production: developing analysis tooling, integrating tests and dependencies for wider community use, and applying machine learning to extract biological insight. Trained in biomathematics and computational biology, he pairs rigorous quantitative foundations with practical server maintenance and pipeline engineering to deliver reproducible, scalable bioinformatics workflows.
8 years of coding experience
2 years of employment as a software developer
Master of Science - MS, Biomathematics, Bioinformatics, and Computational Biology, Master of Science - MS, Biomathematics, Bioinformatics, and Computational Biology at Università degli Studi di Verona
Stackoverflow
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Github Skills (6)
bioinformatics10
conda10
package-management10
bash9
docker4
dockers4
Programming languages (5)
Github contributions (5)
bioconda/bioconda-recipes
May 2019 - Jan 2023
Conda recipes for the bioconda channel.
Role in this project:
DevOps Engineer
DevOps EngineerContributions:97 reviews, 30 commits, 170 PRs in 3 years 9 months
Contributions summary:Samuele primarily focused on creating and modifying recipes for the bioconda channel, specifically for the "crispritz" and "crisprme" packages. Their contributions involved modifying build scripts, updating meta files, and integrating new dependencies and functionalities, indicating a focus on package management and build processes. They also made modifications to incorporate tests and integrate new tools within the packages. The user's work directly contributed to the usability of bioinformatics tools within the bioconda ecosystem.
recipescondabiocondabioinformaticspackage-management
pinellolab/CRISPRitz
Mar 2022 - Jan 2023
Contributions:42 releases, 19 commits, 275 pushes in 10 months
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