Santiago Carmona
Associate Professor
Lausanne, Vaud, Switzerland
Summary
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Senior🎓
Top SchoolSantiago Carmona is an associate professor and computational biologist based in Lausanne with eight years of focused experience developing methods to analyze high-throughput single-cell and spatial omics data. He leads groups at the SIB Swiss Institute of Bioinformatics and University of Geneva’s Department of Pathology and Immunology, applying systems immunology and single-cell genomics to decode cancer–immune interactions and treatment trajectories. His work bridges method development and biological insight, aiming to map how cell states and cell–cell interactions drive disease progression and therapy responses. A PhD-trained bioinformatician with a track record of academic leadership and teaching across Argentina, Switzerland, and the US, he blends deep computational expertise with translational cancer immunology. Notably, his career path includes roles from Fulbright-supported computational immunology to SNF Ambizione fellowship leadership, reflecting both international collaboration and sustained funding success.
8 years of coding experience
8 years of employment as a software developer
Doctor of Philosophy (Ph.D.), Doctor en Biología Molecular y Biotecnología, Doctor of Philosophy (Ph.D.), Doctor en Biología Molecular y Biotecnología at Universidad Nacional de General San Martín
Github Skills (19)
scoring10
single-cell-genomics10
projection10
r-package10
atlas10
transcriptomics10
single-cell-analysis10
rna-seq10
bioinformatics10
genomics10
signature9
filtering9
prediction8
r8
snakemake4
Programming languages (4)
Github contributions (5)
carmonalab/TILPRED
Mar 2019 - Oct 2022
Tumor-Infiltrating CD8 Lymphocytes states prediction
Contributions:2 releases, 41 commits, 3 PRs in 3 years 8 months
predictiontumor
carmonalab/scIntegrationMetrics
Jun 2022 - Dec 2023
R implementation of integration metrics for single-cell data
Contributions:1 release, 10 pushes in 1 year 6 months
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