Sarah Nadeau

Bioinformatician Computational Biologist

Switzerland
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Summary

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Senior
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Top School
Sarah Nadeau is a bioinformatician and computational biologist with eight years of experience translating pathogen genomics into public health insights. Currently at the Institute of Molecular and Clinical Ophthalmology Basel, she applies phylogenetic and phylodynamic methods developed during a PhD at ETH Zürich to infectious disease surveillance and outbreak analysis. Her work spans wastewater influenza quantification, transmission cluster methodology evaluated during a Fred Hutch visit, and containerized public-health bioinformatics tools tested with GitHub Actions at CDC. She combines hands-on sequencing analysis with reproducible software practices, making complex genomic data accessible for decision-making. Based in Switzerland, she brings a rare mix of academic rigor and operational public-health experience that accelerates the path from sequences to actionable recommendations.
code8 years of coding experience
job2 years of employment as a software developer
bookMasters of Science, Biological Engineering, Masters of Science, Biological Engineering at Cornell University
bookDoctor of Philosophy - PhD, Genomic Epidemiology, Doctor of Philosophy - PhD, Genomic Epidemiology at ETH Zürich
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Github Skills (34)

docker10
health10
singularity10
bioinformatics10
genomics8
virus8
sequencing7
rna-seq6
phylogeny6
genome6
genomes6
next-generation-sequencing6
science5
database-schema5
api5

Programming languages (10)

DockerfileC++RRustTeXNextflowHTMLJupyter Notebook

Github contributions (5)

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SarahNadeau/docker-builds

Dec 2021 - May 2023

:package: :whale: Dockerfiles and documentation on tools for public health bioinformatics
Contributions:229 pushes, 31 branches in 1 year 4 months
healthdockerpublic-healthbioinformaticswhale
Contributions:106 pushes, 1 branch in 1 month
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Sarah Nadeau - Bioinformatician Computational Biologist