Sarath Murugan
Bioinformatician
Stockholm, Sweden
Summary
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SeniorSarath Murugan is a bioinformatician with over eight years of experience building and operationalizing clinical genomics and multi-omics pipelines for cancer research, primarily at Karolinska Institutet and SciLifeLab. He specializes in reproducible workflow engineering with Snakemake and Nextflow, containerized HPC deployments, and CI-driven validation of variant-calling pipelines, having contributed to tools like BALSAMIC and a WES fusion detector published in Frontiers in Genetics. Skilled in Python, R, and ML frameworks (TensorFlow, PyTorch), he applies AI to streamline genomic analyses and extract clinically actionable insights for precision oncology trials. Beyond coding, he has led HPC administration and Slurm orchestration to keep production environments reliable under heavy clinical workloads. Colleagues rely on him to bridge method development, software engineering, and translational research—often turning complex sequencing data into validated, deployable workflows.
8 years of coding experience
5 years of employment as a software developer
Github Skills (15)
bioinformatics10
genomics10
pipeline8
genome4
illumina4
snakemake4
validation3
slurm3
structural-variation2
clustering2
python2
csharp2
visualization1
shell1
gatk1
Programming languages (5)
Github contributions (5)
imsarath/autoseq
Nov 2018 - May 2019
Contributions:1 release, 6 PRs, 41 pushes in 5 months
Clinical-Genomics/BALSAMIC_validate
Aug 2019 - Oct 2019
BALSAMIC variant calling workflow validation with Illumina's Platinum Genome
Contributions:1 PR, 24 pushes, 1 branch in 2 months
callinggenomevalidationvariant-callingillumina
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