Sehyun Oh
Assistant Professor at The CUNY Institute for Implementation Science in Population Health
New York, New York, United States
Summary
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Senior🎓
Top SchoolSehyun Oh is an Assistant Professor and translational bioinformatics researcher with over a decade of cancer research experience and seven-plus years building bioinformatics tools. She combines wet-lab expertise in DNA repair and gene editing with strong software development skills (R/Bioconductor, Docker, WDL) to make large-scale genomic analysis reusable and accessible. Her work spans single-cell RNA-seq, CNV analysis of TCGA, and cloud-deployed workflows on GCP/Terra, contributing to AnVIL-Bioconductor interoperability. She has a track record of mentoring and collaborative research across academia and industry, and has translated complex methods into user-friendly bioinformatics services. Based in New York, she uniquely bridges molecular biology and production-grade computational pipelines to accelerate clinical application of genomic discoveries.
10 years of coding experience
16 years of employment as a software developer
B.S., Biological Sciences, summa cum laude, B.S., Biological Sciences, summa cum laude at Seoul National UniversityUniversity of Minnesota Twin Cities
Korean, English
Stackoverflow
1reputation
174reached
0answers
1question
Github Skills (59)
mesh10
pii10
taxonomy10
databases10
ncbi10
exploratory-data-analysis10
microbiome10
bioconductor10
biodiversity10
rna-seq10
bacteria10
principal-component-analysis10
metagenomics10
r-package9
tuple9
Programming languages (8)
Github contributions (5)
shbrief/GenomicSuperSignature
Jul 2020 - Nov 2022
Interpretation of RNAseq experiments through robust, efficient comparison to public databases
Contributions:1 release, 1 review, 289 commits in 2 years 4 months
databasedatabasesrna-seqtransferlearningprincipal-component-analysis
shbrief/GenomicSuperSignaturePaper
Sep 2020 - Oct 2025
Contributions:1 release, 155 pushes, 1 tag in 5 years 1 month
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