Seunghyuk Choi
Assistant Professor at 국민대학교
Seoul, South Korea
Summary
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Senior🎓
Top SchoolSeunghyuk Choi is an assistant professor and computational bioinformatics researcher with a decade of experience developing large-scale software and methods for discovery of novel peptides from proteogenomic data. He combines strong software engineering (notably Java for parallel tools and R for statistical figures) with deep domain expertise in mass spectrometry and NGS-driven peptide identification, producing published pipelines for UTR-encoded peptides, mutation-derived peptides, and proteogenomic mapping. His work spans large multi-omics cancer cohorts in Korea and immunopeptidomics, and he is actively moving toward deep learning–based high-throughput peptide profiling. Equally comfortable writing production-grade bioinformatics tools and analyzing complex omics datasets, he brings a pragmatic blend of coding discipline and biological insight that enables reproducible discovery at scale.
10 years of coding experience
2 years of employment as a software developer
BS, Computer Science & Engineering, BS, Computer Science & Engineering at Hanyang UniversityDoctor of Philosophy (PhD), Bioinformatics, Doctor of Philosophy (PhD), Bioinformatics at 한양대학교
Github Skills (24)
dia8
mass7
bioinformatics7
sequencing6
mass-spectrometry6
database-sequence4
genomics4
python3
transformer3
data-analysis3
derived3
scoring3
spectra3
nextflow2
sequence-alignment2
Programming languages (5)
Github contributions (5)
progistar/pXg
Sep 2021 - Feb 2023
Contributions:24 releases, 165 commits, 252 pushes in 1 year 5 months
progistar/PepQueryMHC
Apr 2024 - Mar 2025
Contributions:1 PR, 74 pushes, 1 branch in 11 months
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