Shashwat Sahay
Lead Computational Biologist
Berlin Metropolitan Area Germany
Summary
👤
Senior🎓
Top SchoolShashwat Sahay is a Lead Computational Biologist based in the Berlin area with a decade of experience applying bioinformatics to cancer genomics and tumour heterogeneity. He leads development of open-source pipelines for UMI-based NGS data and drives deconvolution efforts to dissect lymphoma and spatial tumour heterogeneity, translating complex sequencing data into biological insight. His background spans method development (methylome deconvolution, MeDeCom/FactorViz) and applied toxicology/QSAR modelling, giving him a rare blend of statistical, computational and domain expertise. Comfortable moving projects from research to reusable tooling, he combines hands-on pipeline engineering with a strong publication-driven research mindset.
10 years of coding experience
2 years of employment as a software developer
Vellore Institute of TechnologyMaster's degree, Bioinformatics, Master's degree, Bioinformatics at Universität des Saarlandes
English, Hindi, German
Github Skills (83)
snakemake9
genome9
sequencing9
rna-seq8
genomics8
bioinformatics8
workflow-management8
decomposition8
deploying7
orange7
deep-learning6
variants6
fasta6
science6
bioconda6
Programming languages (13)
Github contributions (5)
HiDiHlabs/ssam-lite-server
Sep 2021 - Oct 2021
Contributions:1 release, 5 PRs, 12 pushes in 13 days
shashwatsahay/moodsensor
Oct 2018 - Oct 2018
Contributions:45 pushes, 1 branch in 1 day
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