Shaun Adkins
Senior Bioinformatics Software Engineer
Baltimore, Maryland, United States
Summary
👤
Senior🎓
Top SchoolShaun Adkins is a Senior Bioinformatics Software Engineer with 12 years of experience building data portals and pipelines at the Institute for Genome Sciences, where he leads development of the gEAR multiomic visualization and analysis platform and supports the NeMO Data Archive. Based in Baltimore, he combines hands-on software engineering with domain expertise from an MBin in Bioinformatics and a BS in Biology, and he also teaches Python to graduate students. Shaun maintains an active GitHub and scholarly profile, reflecting a blend of research-focused tooling and production-grade bioinformatics systems. He tends to keep a low-profile LinkedIn presence but is accessible to students and collaborators and prefers to share up-to-date work via his personal site.
12 years of coding experience
13 years of employment as a software developer
MBin, Bioinformatics, MBin, Bioinformatics at Virginia Commonwealth UniversityBS, Biology, International Studies, BS, Biology, International Studies at Elon University
English
Github Skills (88)
seq10
transcriptomics10
gene-expression10
genomics10
single-cell-analysis10
rna-seq10
differential-expression10
portal10
scanpy10
viewer10
bioinformatics10
depth10
pipeline9
python9
machine-learning9
Programming languages (11)
Github contributions (5)
IGS/gEAR
Jan 2021 - Jan 2023
The gEAR Portal was created as a data archive and viewer for gene expression data including microarrays, bulk RNA-Seq, single-cell RNA-Seq and more.
Contributions:911 commits, 113 PRs, 1483 pushes in 2 years 1 month
data-archivegene-expressionbulk-rna-seqgenomicsarchive
jorvis/ergatis
Oct 2014 - Jan 2023
Contributions:6 releases, 915 commits, 3 PRs in 8 years 4 months
computational-analysismonitorpythonpipelineweb-based
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