Shaun Adkins
Senior Bioinformatics Software Engineer
Baltimore, Maryland, United States
Summary
👤
Senior🎓
Top SchoolShaun Adkins is a Senior Bioinformatics Software Engineer with 12 years of experience building data portals and pipelines at the Institute for Genome Sciences, where he leads development of the gEAR multiomic visualization and analysis platform and supports the NeMO Data Archive. Based in Baltimore, he combines hands-on software engineering with domain expertise from an MBin in Bioinformatics and a BS in Biology, and he also teaches Python to graduate students. Shaun maintains an active GitHub and scholarly profile, reflecting a blend of research-focused tooling and production-grade bioinformatics systems. He tends to keep a low-profile LinkedIn presence but is accessible to students and collaborators and prefers to share up-to-date work via his personal site.
13 years of coding experience
13 years of employment as a software developer
MBin, Bioinformatics, MBin, Bioinformatics at Virginia Commonwealth UniversityBS, Biology, International Studies, BS, Biology, International Studies at Elon University
English
Github Skills (71)
python10
transcriptomics10
gene-expression10
pipeline10
single-cell-analysis10
rna-seq10
monitor10
metagenomics10
scanpy10
docker-image10
bioinformatics10
depth10
differential-expression9
aggregate9
cffi8
Programming languages (12)
Github contributions (5)
IGS/FADU
Dec 2017 - Jun 2022
Feature Aggregate Depth Utility
Contributions:17 releases, 201 commits, 2 PRs in 4 years 6 months
aggregatedepth
adkinsrs/ergatis-docker-recipes
Oct 2016 - Dec 2019
Contributions:204 pushes, 3 branches in 3 years 1 month
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