Shubham Gupta
Postdoctoral Scholar at Stanford University
Palo Alto, California, United States
Summary
👤
Senior🎓
Top SchoolShubham Gupta is an electrical engineer turned postdoctoral scholar in Palo Alto with 10 years of experience applying high-throughput proteomics, mass spectrometry, and computational methods to life science research. At Stanford he combines protein foundation models, scRNA-seq and MS data to discover tumor-associated antigens, building on graduate work that produced algorithms to align DIA runs across instruments for reproducible multi-site proteomics. Comfortable at the interface of wet lab and code, he has taught introductory programming and advised on scientific publishing, reflecting a talent for translating complex methods into usable workflows. His background in electrical engineering informs a systems-level approach to experimental design and signal processing in proteomics, making him adept at bridging methodology and biological insight.
10 years of coding experience
Master's Degree, Electrical Engineering, Master's Degree, Electrical Engineering at Western UniversityIndian Institute of Technology Roorkee
Japanese, Hindi
Github Skills (84)
mass10
ms-data10
dia10
mass-spectrometry10
r-package10
linux9
windows9
bioconductor9
scoring9
spec9
openms9
core-package8
semi-supervised-learning8
algorithms8
bioinformatics8
Programming languages (8)
Github contributions (5)
Roestlab/DIAlignR
Jan 2020 - Jan 2020
This is a R package for alignment of DIA mass-spec data
Contributions:1 release, 3 commits, 47 PRs in 1 day
r-packagerstatsalignmentspecmass-spec
shubham1637/DIAlignR
Sep 2018 - Jan 2023
This is a R package for alignment of DIA mass-spec data
Contributions:6 releases, 34 reviews, 895 commits in 4 years 4 months
r-packagerstatsalignmentspecmass-spec
Find and Hire Top DevelopersWe’ve analyzed the programming source code of over 60 million software developers on GitHub and scored them by 50,000 skills. Sign-up on Prog,AI to search for software developers.