Simonas Marcišauskas
Computational Biologist
Gothenburg, Sweden
Summary
👤
Senior🎓
Top SchoolSimonas Marcišauskas is a computational biologist with 11 years of experience specializing in genome-scale and yeast metabolic modelling, currently applying his expertise at AIxBIO in Gothenburg. He holds a PhD in Systems Biology from Chalmers and a strong bioinformatics foundation from the University of Skövde, combining academic rigor with industrial delivery. At EV Biotech he led development and validation of multiple systems-biology workflows, optimized protein-synthesis modeling pipelines and implemented NGS-based fungal genome annotation, accelerating strain development projects. He has a track record of translating complex models into operational pipelines, supervising innovation projects to completion and improving data visualization and reporting for cross-functional teams. Known for pragmatic automation and reproducible workflows, he blends hands-on coding with biological insight to boost productivity and predictability in microbial cell factory projects. An observant detail: his background spans both wet-lab-aware bioengineering and production-ready computational tooling, making him effective at bridging research and deployment.
10 years of coding experience
2 years of employment as a software developer
M.Sc. Bioinformatics, Bioinformatics, M.Sc. Bioinformatics, Bioinformatics at University of SkövdeB.Sc. Bioenginering, Biotechnology, B.Sc. Bioenginering, Biotechnology at Vilnius Tech - Vilnius Gediminas Technical UniversityDoctor of Philosophy - PhD, Systems Biology, Doctor of Philosophy - PhD, Systems Biology at Chalmers University of Technology
English, Lithuanian, Swedish, Russian
Github Skills (24)
raven10
genome10
toolbox10
metabolic-models10
bioinformatics10
systems-biology10
genomics10
genome-annotation10
pipeline9
scale9
transcriptomics9
comparative-genomics9
constraint8
optimisation7
cobra7
Programming languages (3)
Github contributions (5)
SysBioChalmers/Kluyveromyces_marxianus-GEM
Oct 2019 - Jun 2024
The consensus GEM for Kluyveromyces marxianus
Contributions:1 release, 12 PRs, 51 pushes in 4 years 8 months
gemconsensus
simas232/ToDoIt
Jun 2021 - Jul 2021
A console application featuring ToDoIt
Contributions:2 releases, 6 reviews, 14 PRs in 16 days
consoleconsole-applicationterminal
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