Simone Codeluppi
Principal Scientist, Computational Biology R&D Team Leader
Stockholm, Stockholm County, Sweden
Summary
👤
Senior🎓
Top SchoolSimone Codeluppi is a computational biologist and R&D leader with over a decade of experience building automated microscopy assays and scalable image-analysis pipelines for single-molecule spatial transcriptomics. Currently heading Computational Biology at Moleculent and co‑founder/CTO of Moligo Technologies, she blends hands‑on microscopy hardware and fluidics development with high‑performance computational toolbuilding (MPI, custom HDF5) to process terabytes of bioimage data. Her career spans academia and industry—from developing high‑throughput smFISH at Karolinska Institutet to leading bioinformatics and customer‑facing analytics at imaging startups—making her fluent in assay design, validation, and product integration. Known for shipping end‑to‑end solutions, she pairs experimental optics expertise with software engineering to turn complex biological workflows into automated, production‑grade platforms. Based in Stockholm, Simone also brings early entrepreneurial chops in web and media ventures, reflecting a practical, multidisciplinary problem‑solving style.
11 years of coding experience
14 years of employment as a software developer
University of California, San DiegoMaster of Science (M.S.) Biochemistry and Molecular Biology, Master of Science (M.S.) Biochemistry and Molecular Biology at University of Parma, ItalyBachelor of Science (B.S.) Biology, Bachelor of Science (B.S.) Biology at University of Parma
English, Italian
Github Skills (82)
python10
image-processing10
pydata10
pandas10
computer-vision10
dask10
image10
keras10
multiprocessing10
pipeline9
mask9
object-detection9
parallel9
distributed-computing9
parallel-computing9
Programming languages (4)
Github contributions (5)
linnarsson-lab/pysmFISH_auto
Jul 2020 - Feb 2023
Version of the pysmFISH pipeline that run without human in the loop
Contributions:1969 commits, 2 PRs, 239 pushes in 2 years 7 months
pythonpipelinepipeline-frameworkmultiprocessingloop
linnarsson-lab/pysmFISH
Feb 2018 - Aug 2018
Analysis of smFISH data
Contributions:95 commits, 1 PR, 60 pushes in 6 months
pythonsmfish
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