Stavros Giannoukakos
Postdoctoral Researcher at Hellenic Pasteur Institute
Granada, Andalusia, Spain
Summary
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Senior🎓
Top SchoolStavros Giannoukakos is a postdoctoral bioinformatician based in Granada with nine years of experience building high-performance genomics software and pipelines for 2nd- and 3rd-generation sequencing. With a foundation in applied mathematics and a Master's in Bioinformatics, he blends algorithmic rigor with practical engineering to accelerate RNA-seq, single-cell, and epigenomic analyses. His work includes developing tools that sped and improved RNA-seq interpretation during his PhD and deploying autonomous single-cell and ncRNA pipelines in international research labs. Comfortable translating complex methods for non-technical collaborators, he thrives in interdisciplinary teams bridging biology, statistics and software. He is particularly focused on engineering scalable, reproducible solutions that enable new discoveries in epitranscriptomics and cancer genomics.
9 years of coding experience
7 years of employment as a software developer
Bachelor's degree, Applied Mathematics, 2:2, Bachelor's degree, Applied Mathematics, 2:2 at University of CreteMaster's degree, Bioinformatics, 2:1, Master's degree, Bioinformatics, 2:1 at University of Amsterdam
English, German, Greek, Spanish
Github Skills (11)
rna-seq6
structural-variation5
bioinformatics5
seq4
pipeline4
r-package4
genomics3
fusion3
counting2
deduplication1
umi1
Programming languages (3)
Github contributions (5)
MarinusVL/scRNApipe
May 2017 - May 2017
Contributions:1 release, 18 commits, 1 PR in 26 days
rnaseqpipelineumialignmentgenomics
sgiannouk/nanoSite
Jun 2022 - Sep 2023
Contributions:10 pushes, 2 branches in 1 year 3 months
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