Stefan Ebmeyer
Bioinformatics Specialist
Gothenburg, Sweden
Summary
👤
Senior🎓
Top SchoolStefan Ebmeyer is a bioinformatics specialist with nine years of experience applying computational methods to genomic and metagenomic data, currently supporting Swedish research through the National Bioinformatics Infrastructure Sweden (NBIS). He holds a PhD in Bioinformatics from the University of Gothenburg and has a strong track record using Python and R to build analysis pipelines, develop tools (including the comparative genomics package GEnView), and maintain research computing infrastructure. His postdoctoral work applied machine learning to trace the evolution of antibiotic resistance and produced reusable software for bacterial growth-curve analysis. Comfortable bridging academia and service-oriented bioinformatics, he combines hands-on tool development with teaching and collaborative analysis in international projects. Based in Gothenburg, he brings domain expertise in microbial genomics and a practical bent for turning complex data into reproducible insights.
9 years of coding experience
2 years of employment as a software developer
Bachelor's degree, Biology/Biological Sciences, General, Bachelor's degree, Biology/Biological Sciences, General at University of KonstanzDoctor of Philosophy - PhD, Bioinformatics, Doctor of Philosophy - PhD, Bioinformatics at University of Gothenburg
Github Skills (24)
genes10
package-management10
conda10
genetic10
bioinformatics10
phylogeny10
bioconda10
ecology9
genetics9
sequence-alignment9
comparative-genomics9
genomics9
sequence8
treeview8
tree-structure8
Programming languages (4)
Github contributions (5)
EbmeyerSt/GEnView
Dec 2020 - Apr 2022
GEnView - A phylogeny based comparative genomics software to analyze the genetic environment of genes
Contributions:3 releases, 3 reviews, 51 commits in 1 year 4 months
phylogenygeneticsgeneticgenomicscomparative
EbmeyerSt/ARG_loci_comparative_pipeline
Jul 2020 - Sep 2020
Contributions:22 commits, 12 pushes in 1 month
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