Stefan Milosavljevic
Biomedical Data Engineer
Zurich, Zurich, Switzerland
Summary
👤
Senior🎓
Top SchoolStefan Milosavljevic is a Biomedical Data Engineer with nine years' experience marrying biology and computation to build FAIR, reproducible data systems for hospitals, -omics centers and research initiatives. Trained at the University of Lausanne and ETH Zurich and honed during a PhD and postdoc at the University of Zurich, he specializes in large-scale sequencing analysis, automated workflows, benchmarking and data visualization in epigenetics and evolutionary genomics. At the Swiss Data Science Center he focuses on secure, efficient biomedical pipelines and open research practices that prioritize reproducibility and FAIR principles. Comfortable teaching statistics and bioinformatics to diverse audiences, he also applies machine learning to clinical problems and mentors students on statistical rigor. Outside work he channels analytical curiosity into long-distance running and cooperative gaming, reflecting a collaborative, endurance-oriented approach to complex projects.
9 years of coding experience
2 years of employment as a software developer
Bachelor of Science - BSc, Biology, General, Bachelor of Science - BSc, Biology, General at University of LausanneMaster of Science - MSc, Bioinformatics, Master of Science - MSc, Bioinformatics at ETH ZürichHigh School Diploma, Biology and Chemistry, High School Diploma, Biology and Chemistry at Liceo cantonale Lugano 1Middle School Diploma, Middle School Diploma at Scuole medie Lugano 2
English, Serbian, Italian, French, German
Github Skills (95)
biomedical10
neo4j9
snakemake9
ontology9
shacl9
bioinformatics9
rdfs9
genome9
sequencing9
rdf9
knowledge-graph8
api8
reproducible-science8
genomics8
memgraph8
Programming languages (13)
Github contributions (5)
supermaxiste/ARPEGGIO
Apr 2019 - Dec 2022
A SnakeMake workflow to analyse whole genome bisulfite sequencing data from allopolyploids.
Contributions:1 release, 83 commits, 25 PRs in 3 years 8 months
genomeplantsbioinformaticssnakemake-workflowwhole-genome-sequencing
sdsc-ordes/shacl
Feb 2023 - Mar 2024
SHACL API in Java based on Apache Jena
Contributions:9 releases, 4 reviews, 9 PRs in 1 year 1 month
clidata-validationrdf
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