Stefano De Pretis
Computational Biologist
Milan, Lombardy, Italy
Summary
👤
Senior🎓
Top SchoolStefano De Pretis is a computational biologist with a decade of experience leading bioinformatics efforts at the Center for Omics Sciences, IRCCS Ospedale San Raffaele, where he coordinates NGS-driven projects for the Division of Neuroscience. Trained in molecular biotechnology and bioinformatics, he built his research foundation during a PhD and a visiting stint at Harvard Medical School and spent eight years as a post-doc at Istituto Italiano di Tecnologia. He bridges hands-on genomic data analysis and technology implementation, collaborating across clinical and research groups to operationalize sequencing workflows. Known for pragmatic problem-solving, he combines academic rigor with applied pipeline development to translate omics data into actionable insights for neuroscience.
10 years of coding experience
Laurea Magistrale, Bioinformatics, Laurea Magistrale, Bioinformatics at Università degli Studi di Milano-Bicocca
English
Github Skills (25)
seq10
rates10
rna-seq10
inspect9
bioinformatics8
synthesis7
computational-biology6
genomics5
inference5
deconvolution5
sequence-analysis4
overlapping4
pushpin4
pipeline3
cran3
Programming languages (4)
Github contributions (5)
ste-depo/INSPEcT
Dec 2015 - Sep 2020
INSPEcT (INference of Synthesis, Processing and dEgradation rates from Transcriptomic data) RNA-seq data in time-course experiments or different conditions, with or without the support of nascent RNA data.
Contributions:178 commits, 53 PRs, 72 pushes in 4 years 10 months
ratesdegradationnascentinferenceinspect
ste-depo/scripts
Aug 2020 - Jul 2024
Contributions:2 pushes, 1 branch in 3 years 11 months
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