Stephen Shank
Computational Biologist
Philadelphia, Pennsylvania, United States
Summary
👤
Senior🎓
Top SchoolStephen Shank is a computational biologist and applied mathematician with 11 years of experience building end-to-end bioinformatics tools, models, and visualizations for evolutionary biology and public health. He has led scalable sequence analysis workflows used by hundreds of users and dozens of public health officials, contributed figures and analyses to high-profile journals, and helped deliver CDC-funded deliverables. Comfortable across research and production, he designs custom mathematical models, data pipelines, and interactive visualizations that turn large, heterogeneous datasets into actionable insights. His background spans academia and industry—from MIT mathematical imaging to co-founding data-driven mobile apps—bringing both rigorous theory and practical software engineering to projects. Based in Philadelphia, he now applies this blend of research depth and product focus as a computational biologist at the University of Pennsylvania. An often-overlooked strength is his track record of translating complex analyses into reproducible workflows and stakeholder-ready results.
11 years of coding experience
11 years of employment as a software developer
Doctor of Philosophy - PhD Mathematics, Doctor of Philosophy - PhD Mathematics at Temple University
Italian
Stackoverflow
362reputation
303kreached
5answers
0questions
Github Skills (127)
snakemake10
package-management10
bioconda10
conda10
anaconda10
statistical-models10
evolution10
phylogenetic-trees10
d3js10
visualization10
viewer10
beast10
phylogenetics10
bioinformatics10
os-agnostic10
Programming languages (12)
Github contributions (5)
stephenshank/d3-react-axis
Jun 2019 - Nov 2020
A React axis component that tries to match D3's axis API
Contributions:3 releases, 17 commits, 15 pushes in 1 year 5 months
apireactaxismatch
stephenshank/hyphy-vision
Mar 2017 - Apr 2022
Visualize HyPhy results in your browser
Contributions:4 PRs, 246 pushes, 75 branches in 5 years 1 month
browservisualizejavascriptdata-visualizationvisualization
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