Subazini Kosalai
Bioinformatician
Gothenburg, Sweden
Summary
👤
Senior🎓
Top SchoolSubazini Kosalai is a bioinformatician with nine years of experience applying multi-omics, metabolic modeling, and pipeline development to biomarker discovery and clinical decision support. With a Ph.D. focused on metabolic pathway reconstruction and flux optimization to boost lovastatin production, she pairs deep academic expertise with practical tool-building—from genome-scale models and OMICS integration toolboxes to exome and single-cell sequencing pipelines. Her work spans clinical and research settings across Swedish institutions, including spatial transcriptomics and Hi-C oligonucleotide prediction at Gothenburg, and mitochondrial and CNV analyses for regional healthcare. She also contributes to community bioinformatics tooling, maintaining tests in the widely used nf-core/modules ecosystem, reflecting a commitment to reproducible workflows. Notably, she bridges computational rigor and biological insight by designing databases, web services, and custom algorithms that turn complex biological data into actionable results.
9 years of coding experience
10 years of employment as a software developer
student trainee, Bioinformatics, student trainee, Bioinformatics at DBT, BTISnetAnna University, ChennaiM.Tech, Bioinformatics, M.Tech, Bioinformatics at Shanmugha Arts, Science, Technology and Research AcademyB.E, Computer Science, B.E, Computer Science at Manonmaniam Sundaranar University
Github Skills (9)
go-modules10
jsmodules10
argo-workflows10
workflow-engine10
workflow-automation10
kernel-module10
nf-core10
nextflow10
testing9
Programming languages (4)
Github contributions (5)
nf-core/modules
Jan 2022 - May 2022
Repository to host tool-specific module files for the Nextflow DSL2 community!
Role in this project:
QA Engineer / Test Automation Engineer
QA Engineer / Test Automation EngineerContributions:1 review, 19 commits, 1 PR in 4 months
Contributions summary:Subazini primarily contributed to updating and maintaining test files within the `nf-core/modules` repository. They modified test workflows for the `hmtnote` and `maxquant` modules, specifically focusing on updating input parameters and the expected outputs. This includes adjusting input file paths and modifying the processing steps within the test workflows. The changes indicate a focus on ensuring the functionality and correctness of the modules through testing.
nf-corehostnextflow-dsl2nextflowdsl2
sysbiocoder/Mito-gatk
May 2022 - Nov 2024
Snakemake workflow for mitochondrial analysis using gatk best practices
Contributions:1 PR, 6 pushes in 2 years 5 months
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