Sudhir Ghandikota
Senior Bioinformatics Scientist
Cincinnati, Ohio, United States
Summary
👤
Senior🎓
Top SchoolSudhir Ghandikota is a Senior Bioinformatics Scientist with a Ph.D. in Computer Science focused on bioinformatics and over a decade of experience bridging software engineering and translational biomedical research. He designs and implements multimodal and multiview machine learning frameworks—particularly unsupervised and self-supervised graph neural networks—for biomarker and drug-target discovery, and is extending these methods to single-cell transcriptomics. At Cincinnati Children’s Hospital he has moved ideas from doctoral research into production-grade deep learning pipelines using TensorFlow, PyTorch (including PyTorch Geometric) and Optuna for hyperparameter optimization. His background in large-scale data engineering and distributed systems from early roles (Hadoop, HBase, ETL) gives him a rare ability to take complex genomic ML from data ingestion through model development to deployable tools. He combines strong academic publication experience with practical tool-building, including interactive web-based bioinformatics utilities and reproducible pipelines for public genomics resources.
10 years of coding experience
11 years of employment as a software developer
Doctor of Philosophy - PhD, Computer Software Engineering, Doctor of Philosophy - PhD, Computer Software Engineering at University of CincinnatiJawaharlal Nehru Technological University Hyderabad
English, Telugu, Hindi
Stackoverflow
1reputation
0reached
0answers
0questions
Github Skills (37)
deprecated9
coverage7
virtual-screening7
python7
jupyter-notebook7
ppi7
bioinformatics6
deep-learning6
junit6
kernel-methods6
stochastic6
machine-learning6
autoencoder6
representation-learning6
prediction5
Programming languages (3)
Github contributions (5)
SudhirGhandikota/LeetCode
May 2016 - Feb 2023
Contributions:20 pushes, 1 branch in 6 years 9 months
SudhirGhandikota/COVID19_secondary_analysis
Mar 2021 - Jul 2021
Contributions:10 commits, 8 pushes, 1 branch in 4 months
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