Sujay Patil
Bioinformatics Software Developer
San Francisco, California, United States
Summary
👤
Senior🎓
Top SchoolSujay Patil is a bioinformatics software developer with nine years of experience building open-source tools and data models that make complex biomedical metadata FAIR and interoperable. Based at Berkeley Lab, he contributes to LinkML and has applied schema-driven toolchains to harmonize cancer and microbiome datasets and to build the CCDH common data model. He blends backend engineering (Python, APIs, CI/CD) with full-stack and data-pipeline experience from clinical informatics to synthetic-engineering detection, and has integrated knowledge graphs and ontologies as inputs to ML workflows. Comfortable in research and production environments, Sujay has a track record of turning domain-specific standards into usable tooling (e.g., DataHarmonizer) for federally funded projects. Notably, his work often sits at the intersection of ontologies, JSON-LD/LinkML schemas and practical submission interfaces, enabling downstream analytics and reproducible research.
9 years of coding experience
2 years of employment as a software developer
Master's degree, Bioinformatics, 3.85/4.0, Master's degree, Bioinformatics, 3.85/4.0 at University of Southern CaliforniaSecondary School, 10.0 CGPA in Class 10 CBSE Examinations, Secondary School, 10.0 CGPA in Class 10 CBSE Examinations at Delhi Public School - Bangalore SouthBachelor's degree, Computer Science and Engineering, 9.05/10.0, Bachelor's degree, Computer Science and Engineering, 9.05/10.0 at Vellore Institute of Technology
English, Kannada, Hindi
Stackoverflow
58reputation
11kreached
14answers
8questions
Github Skills (122)
json-schema10
semantic-web10
object-model10
metadata10
linkml10
data-management10
mapping-tools10
mappings10
shex10
microbiome10
shacl10
transcriptomics10
specification10
genomics10
owl10
Programming languages (9)
Github contributions (5)
microbiomedata/metadata-for-user-facility-template-transformations
Dec 2022 - Mar 2025
CLI tool to convert metadata submissions from the NMDC submission portal to user facility Excel templates
Contributions:9 reviews, 4 PRs, 32 pushes in 2 years 3 months
sujaypatil96/mixs
Oct 2023 - Apr 2024
Minimum Information about any (X) Sequence” (MIxS) specification
Contributions:41 PRs, 47 pushes, 27 branches in 5 months
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