Thanh Le Viet
Principal Bioinformatics Developer
South Norfolk, England, United Kingdom
Summary
🤩
Rockstar🎓
Top SchoolThanh Le Viet is a Principal Bioinformatics Developer with 11 years’ experience building cloud-native genomics infrastructure and large-scale NGS analysis pipelines. He has led cloud deployments and cost-optimisations for production sequencing workflows at Theiagen Genomics and previously developed national-scale SARS-CoV-2 sequencing pipelines, Nextflow/Galaxy integrations and OpenStack HPC at Quadram Institute. Thanh blends deep domain training (PhD in ecology/evolution and GIS/epidemiology background) with hands-on automation work—contributing CI/CD and build automation to the high-profile bioconda-recipes ecosystem to streamline bioinformatics package releases. He is comfortable across short- and long-read technologies (Illumina, Nanopore, PacBio), phylogenetics and scalable cloud ops, and brings a unique mix of spatial epidemiology and software engineering experience to translate complex research needs into robust production systems.
11 years of coding experience
9 years of employment as a software developer
Msc, Cartography, Remote Sensing and GIS, Msc, Cartography, Remote Sensing and GIS at Hanoi University of Mining and GeologyDoctor of Philosophy (PhD), Ecology, Evolution, Genetic Resources, and Paleontology, Doctor of Philosophy (PhD), Ecology, Evolution, Genetic Resources, and Paleontology at GAIA, University of MontpellierModeling, Epidemiology, Modeling, Epidemiology at School of Population Health, University of Queensland
English, French
Stackoverflow
1reputation
0reached
0answers
0questions
Github Skills (14)
bioinformatics10
conda10
bash10
package-management10
makefile9
gnu-make9
rust8
perl7
python7
cmake7
githubaction-workflow5
github-ci5
docker4
dockers4
Programming languages (18)
Github contributions (5)
bioconda/bioconda-recipes
Jan 2018 - Aug 2022
Conda recipes for the bioconda channel.
Role in this project:
Automation Engineer / Build & Release Engineer
Automation Engineer / Build & Release EngineerContributions:707 reviews, 68 commits, 497 PRs in 4 years 6 months
Contributions summary:Thanh primarily contributed to the automation of software builds and the management of package releases within the bioconda-recipes repository. Their work focused on creating and modifying build scripts (`build.sh`) for various bioinformatics tools, including the integration of dependencies and configuration for various environments. They also worked on integrating various build tools and configurations to improve the build and release processes, as well as the CI/CD pipeline with a focus on tools related to bioinformatics packages.
recipescondabiocondabioinformaticspackage-management
thanhleviet/docker
Apr 2018 - Oct 2020
Dockerfiles for various bioinformatics tools/pipelines
Contributions:6 PRs, 38 pushes, 5 branches in 2 years 7 months
dockerbioinformaticspipelinesdockerfilescomputational-biology
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