Thomas Denecker
Ingénieur De Recherche En Courtage Des Données at Institut Français de Bioinformatique
Bourg-la-Reine, Île-de-France, France
Summary
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Senior🎓
Top SchoolThomas Denecker is a research engineer in data brokerage at the French Institute of Bioinformatics with eight years’ experience orchestrating data lifecycles from production through processing to international repository deposition. He combines a strong bioinformatics research background—anchored by a PhD on multi-omics integration and in silico metabolic modeling of pathogenic yeasts—with hands-on development of analysis pipelines and R packages. At IFB he links technical workflows to Data Management Plans and contributes to continuing education in bioinformatics, blending operational data stewardship with training. His career spans quantitative proteomics, high-throughput replication timing analyses and clinical lab experience, giving him a rare mix of computational, experimental and regulatory perspectives. An advocate of Open Science, he presents as an engineer who makes research data interoperable and reusable while keeping tools and documentation accessible.
8 years of coding experience
Diplôme d'état de Techniciens de Laboratoire Médical (DETLM), Technicien clinique / de laboratoire médical, Major de promotion, Diplôme d'état de Techniciens de Laboratoire Médical (DETLM), Technicien clinique / de laboratoire médical, Major de promotion at Institut de Formation de Technicien de Laboratoire Médical (IFTLM)Master Bioinformatique, Bioinformatique, Master Bioinformatique, Bioinformatique at Université Paris-SaclayBaccalauréat, Scientifique option physique - chimie, Obtenu avec mention, Baccalauréat, Scientifique option physique - chimie, Obtenu avec mention at Institut Notre-Dame de Bourg - La - ReinePCEM 1 / PAES, Médecine, PCEM 1 / PAES, Médecine at Université Paris DescartesAttestation de Formation aux Gestes et Soins d'Urgence niveau 2, Gestes et soins d'urgence niveau 2, diplômé, Attestation de Formation aux Gestes et Soins d'Urgence niveau 2, Gestes et soins d'urgence niveau 2, diplômé at CESU 75 - Centre d'Enseignement des Soins d'Urgence de ParisCertificat de capacité pour effectuer des prélèvements sanguins, Certificat obtenu, Certificat de capacité pour effectuer des prélèvements sanguins, Certificat obtenu at CHNO Des Quinze-Vingt, ParisLicence de Bioinformatique, Bioinformatique, Licence obtenue, Licence de Bioinformatique, Bioinformatique, Licence obtenue at Université Denis Diderot (Paris VII)
French, English, Spanish, Italian
Stackoverflow
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Github Skills (52)
variants10
des10
rna-seq10
bioinformatics10
par10
r-package9
chip-seq9
bit9
linux8
r8
katacoda8
bam7
training-data7
quarto7
replication7
Programming languages (8)
Github contributions (5)
thomasdenecker/IronYeasts
Dec 2017 - Dec 2017
IronYeasts is a tool suite dedicated to the analysis of iron in pathogenic yeasts :microscope: :books:
Contributions:72 commits, 18 PRs, 59 pushes in 20 days
pythonmicroscopeirondedicatedsuite
thomasdenecker/START-R
Apr 2018 - Oct 2020
Simple Tool for Analysis of Replication Timing with R
Contributions:2 releases, 73 commits, 2 PRs in 2 years 6 months
r-packagereplication
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