Thomas Denecker
Ingénieur De Recherche En Courtage Des Données at Institut Français de Bioinformatique
Bourg-la-Reine, Île-de-France, France
Summary
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Senior🎓
Top SchoolThomas Denecker is a research engineer in data brokerage at the French Institute of Bioinformatics with eight years’ experience orchestrating data lifecycles from production through processing to international repository deposition. He combines a strong bioinformatics research background—anchored by a PhD on multi-omics integration and in silico metabolic modeling of pathogenic yeasts—with hands-on development of analysis pipelines and R packages. At IFB he links technical workflows to Data Management Plans and contributes to continuing education in bioinformatics, blending operational data stewardship with training. His career spans quantitative proteomics, high-throughput replication timing analyses and clinical lab experience, giving him a rare mix of computational, experimental and regulatory perspectives. An advocate of Open Science, he presents as an engineer who makes research data interoperable and reusable while keeping tools and documentation accessible.
8 years of coding experience
Diplôme d'état de Techniciens de Laboratoire Médical (DETLM), Technicien clinique / de laboratoire médical, Major de promotion, Diplôme d'état de Techniciens de Laboratoire Médical (DETLM), Technicien clinique / de laboratoire médical, Major de promotion at Institut de Formation de Technicien de Laboratoire Médical (IFTLM)Master Bioinformatique, Bioinformatique, Master Bioinformatique, Bioinformatique at Université Paris-SaclayBaccalauréat, Scientifique option physique - chimie, Obtenu avec mention, Baccalauréat, Scientifique option physique - chimie, Obtenu avec mention at Institut Notre-Dame de Bourg - La - ReinePCEM 1 / PAES, Médecine, PCEM 1 / PAES, Médecine at Université Paris DescartesAttestation de Formation aux Gestes et Soins d'Urgence niveau 2, Gestes et soins d'urgence niveau 2, diplômé, Attestation de Formation aux Gestes et Soins d'Urgence niveau 2, Gestes et soins d'urgence niveau 2, diplômé at CESU 75 - Centre d'Enseignement des Soins d'Urgence de ParisCertificat de capacité pour effectuer des prélèvements sanguins, Certificat obtenu, Certificat de capacité pour effectuer des prélèvements sanguins, Certificat obtenu at CHNO Des Quinze-Vingt, ParisLicence de Bioinformatique, Bioinformatique, Licence obtenue, Licence de Bioinformatique, Bioinformatique, Licence obtenue at Université Denis Diderot (Paris VII)
French, English, Spanish, Italian
Stackoverflow
1reputation
0reached
0answers
0questions
Github Skills (47)
variants10
des10
rna-seq10
bioinformatics10
bit10
par10
r9
chip-seq9
linux9
quarto8
training-data8
katacoda8
snakemake7
replication7
quantitative7
Programming languages (9)
Github contributions (5)
IFB-ElixirFr/FAIR_EBAII_n2
May 2021 - May 2025
Science ouverte et principes FAIR dans un projet de bioinformatique
Contributions:4 releases, 1 PR, 15 pushes in 4 years
IFB-ElixirFr/IFB-FAIR-data-training
Dec 2020 - Jun 2021
Support for the IFB training on FAIR data. Web site: https://ifb-elixirfr.github.io/IFB-FAIR-data-training/
Contributions:1 release, 140 commits, 2 PRs in 5 months
web-siteelixirfair-datatrainingweb-data
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