Thomas Topilko
Co-founder & CSO at Vibraint ApS - Virtual Brain Technologies
Copenhagen, Capital Region of Denmark
Summary
🎓
Top SchoolThomas Topilko is a co-founder and Chief Scientific Officer who builds scalable, reproducible pipelines that bridge high-throughput 3D brain imaging, spatial omics, and AI-driven analysis. With eight years of multidisciplinary experience spanning histology, tissue clearing, light-sheet microscopy, image analysis, Python tooling and lab automation, he translates complex multimodal datasets into actionable insights via a cloud atlas platform. He has driven spatial omics and imaging efforts at Lundbeck and Gubra and collaborated with leading neuroscientists on developmental and disease models, bringing both academic rigor and CRO-facing project coordination skills. Based in Copenhagen, he pairs hands-on experimental expertise with software-first thinking to deliver end-to-end preclinical workflows that scale; a less obvious strength is his knack for integrating surgical and automation workflows into data pipelines to reduce variability and speed throughput.
7 years of coding experience
4 years of employment as a software developer
P.h.D, Neuroscience, P.h.D, Neuroscience at Sorbonne UniversitéMaster's degree, Molecular and Cellular Biology, Master's degree, Molecular and Cellular Biology at Ecole normale supérieureBachelor's degree, Biology, Bachelor's degree, Biology at Université de Poitiers
French, English, Polish, German, danois
Github Skills (4)
mouse-events8
mouse7
python4
fiber4
Programming languages (2)
Github contributions (5)
Tom-top/fiber_photometry_analysis
Oct 2020 - Aug 2022
Python toolkit for the analysis of fiber photometry data and related video recordings.
Contributions:28 commits, 1 PR, 34 pushes in 1 year 9 months
fiber-photometrypythonphotometryfibervideo-recordings
Tom-top/TopMouseTracker
Jan 2019 - Jan 2022
Simple Mouse Tracker
Contributions:1 release, 54 commits, 6 pushes in 3 years 1 month
mousemouse-eventstracker
Find and Hire Top DevelopersWe’ve analyzed the programming source code of over 60 million software developers on GitHub and scored them by 50,000 skills. Sign-up on Prog,AI to search for software developers.