Thorsten Tiede
Senior Scientist - Data Engineer
Basel, Basel-City, Switzerland
Summary
👤
Senior🎓
Top SchoolThorsten Tiede is a Senior Scientist and Data Engineer with a decade of experience bridging bioinformatics research and production data engineering for personalized medicine and drug discovery. Trained as a bioinformatician (Dr. rer. nat.) at the University of Tübingen, he has led large-scale omics analytics, built reproducible service-oriented platforms with provenance-tracking, and implemented graph-backed RESTful systems using Java Spring and Neo4j. He combines early-career expertise in Oracle-based data warehousing and BI with recent hands-on work building cloud-native lab-to-cloud pipelines and web frontends for assay data. Thorsten has taught undergraduate and graduate bioinformatics and cheminformatics courses, co-authored a book chapter on biomedical data management, and presented at international conferences. He recently deepened his ML/Deep Learning skills across scikit-learn, TensorFlow, PyTorch and the PyData stack, bringing research-grade models closer to deployable decision support. Based in Basel and currently at Roche pRED, he is known for making complex biological data auditable and actionable for scientists and clinicians.
10 years of coding experience
16 years of employment as a software developer
Dr. rer. nat., Applied Bioinformatics, Dr. rer. nat., Applied Bioinformatics at University of TübingenDiplom Informatiker (Bioinformatik), Bioinformatik, Diplom Informatiker (Bioinformatik), Bioinformatik at Eberhard-Karls-Universität Tübingen
German, English
Github Skills (56)
neo4j10
sbml10
systems-biology10
native-code10
persist10
data-format9
graph9
api9
modeling9
markup-language8
java8
biology8
flask-extensions7
data-streams7
markup7
Programming languages (3)
Github contributions (5)
thortiede/sbml4j-compose
Aug 2020 - Oct 2022
manage and run sbml4j using docker-compose
Contributions:3 releases, 2 PRs, 51 pushes in 2 years 1 month
docker-composedockercompose
thortiede/PeCaX
Nov 2020 - Aug 2022
Contributions:8 PRs, 22 pushes, 2 branches in 1 year 9 months
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