Tim Stuart
Principal Scientist at Genome Institute of Singapore
Singapore
Summary
🤩
Rockstar🎓
Top SchoolTim Stuart is a Principal Scientist at the Genome Institute of Singapore with 11 years of experience bridging computational methods and single-cell genomics. Trained with a PhD in Biochemistry from The University of Western Australia, he progressed from postdoctoral research at the New York Genome Center to leading analysis and tool development in a major genomics institute. He contributes to prominent open-source projects like Seurat, improving core functions for visualization and 10X CellRanger data import, showing a practical focus on reproducible, scalable workflows. Known for pragmatic back-end development, he blends deep wet-lab understanding with software engineering to turn complex single-cell datasets into usable insights.
11 years of coding experience
5 years of employment as a software developer
Doctor of Philosophy - PhD, Biochemistry, Doctor of Philosophy - PhD, Biochemistry at The University of Western Australia
Github Skills (5)
single-cell-genomics10
r10
data-analysis9
bioinformatics9
biom9
Programming languages (9)
Github contributions (5)
satijalab/seurat
May 2018 - Dec 2022
R toolkit for single cell genomics
Role in this project:
Back-end Developer
Back-end DeveloperContributions:4 reviews, 335 commits, 15 PRs in 4 years 8 months
Contributions summary:Tim's contributions centered on improving the functionality of the SplitDotPlotGG function, allowing it to handle any number of groups and correctly rendering the gradient legends. They also added a function to read gene expression matrix from 10X CellRanger hdf5 files. Further commits addressed warnings related to object handling, and improved data handling within Seurat object conversion.
single-cell-genomicscranhuman-cell-atlasgenomicsbioinformatics
timoast/signac-paper
Nov 2020 - Nov 2021
Contributions:3 commits, 2 pushes in 1 year
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