Tongji Xing

Scientific Software Developer at RCSB Protein Data Bank

New Brunswick, New Jersey, United States
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Summary

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Senior
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Top School
Tongji Xing is a Scientific Software Developer and computational biologist with nine years of experience building bioinformatics applications, data pipelines, and visualizations, currently contributing to the RCSB Protein Data Bank. He earned a Ph.D. in Computational Biology from Rutgers and moved from bench science to software by self-teaching C, R, Python, SQL and HPC workflows (SLURM) during his graduate research. Tongji combines deep domain knowledge in cell biology and simulation with practical engineering skills to turn complex biological questions into reproducible computational tools and databases. He has strong communication and teaching experience from graduate research and TA roles, enabling effective collaboration across interdisciplinary teams. Notably, his background shows an unusual blend of rigorous experimental training and hands-on software development, making him adept at bridging wet-lab needs and scalable computational solutions.
code9 years of coding experience
job5 years of employment as a software developer
bookDoctor of Philosophy (Ph.D.), Computational Biology, Doctor of Philosophy (Ph.D.), Computational Biology at Rutgers University-New Brunswick
bookMaster’s Degree, Cell/Cellular and Molecular Biology, 3.96, Master’s Degree, Cell/Cellular and Molecular Biology, 3.96 at Appalachian State University
bookBiology, 4.0, Biology, 4.0 at Pfeiffer University
bookBS, Biology, 3.35, BS, Biology, 3.35 at Shanxi University
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Github Skills (12)

blast10
metagenomics9
taxonomy9
bioinformatics9
clustering8
chemistry7
cheminformatics6
materials-informatics5
profiling5
toolbox5
visualization4
data-profiling3

Programming languages (4)

C++CHTMLPython

Github contributions (5)

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xtj87515/RiboViz

Jan 2017 - Jul 2017

Contributions:2 PRs, 7 pushes in 5 months
visualizationprofilingribosome-profiling-dataribosome-profilingribosome
xtj87515/SMOTNT_batch

Mar 2018 - May 2018

Contributions:21 pushes, 1 branch in 2 months
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Tongji Xing - Scientific Software Developer at RCSB Protein Data Bank