Tru Huynh
Michael Nilges Group And Max Bonomi Group System Administrator
Paris, Ile-de-France
Summary
👤
Senior🎓
Top SchoolTru Huynh is a senior system administrator with 11+ years managing large-scale research computing at Institut Pasteur, combining deep Linux/HPC expertise with a PhD in theoretical and computational chemistry. He architects and operates GPU-accelerated clusters and storage environments (1,300+ cores, 150+ TB) for molecular dynamics and CryoEM workloads, and runs a reconfigurable “GPU lab” for the INCEPTION project. An active open-source contributor and former CentOS board director, he has hands-on experience in containerization and build systems (notably contributions to the Singularity/Apptainer ecosystem). He also orchestrates recurring international bioinformatics teaching labs, showing an unusual blend of research, education, and production operations.
11 years of coding experience
5 years of employment as a software developer
Engineer Physics Chemistry and Biochemistry, Engineer Physics Chemistry and Biochemistry at ESPCI Paris - PSLPhD Theoretical and Computational Chemistry, PhD Theoretical and Computational Chemistry at Université Pierre et Marie Curie (Paris VI)
Github Skills (15)
linux10
container10
docker10
containerization10
dockers10
scripting9
build-automation9
yaml9
shell9
script9
sh9
hpc8
build-system8
portability8
cloud-native8
Programming languages (19)
Github contributions (5)
apptainer/singularity
Oct 2016 - Jun 2019
Singularity has been renamed to Apptainer as part of us moving the project to the Linux Foundation. This repo has been persisted as a snapshot right before the changes.
Role in this project:
Back-end & DevOps Engineer
Back-end & DevOps EngineerContributions:19 commits, 16 PRs, 143 comments in 2 years 8 months
Contributions summary:Tru's commits primarily involve updating and modifying build definitions and configuration files, specifically related to containerization and bootstrapping processes. They made changes to include `UpdateURL` functionality within the bootstrap modules for Red Hat-based systems and updated example definition files. They also integrated remote master branch merges and added Alpine Linux and Docker definitions for image builds. The user also addressed merging and fixing of potential issues.
renamedapptainersciencerootless-containersdocker
truatpasteurdotfr/alphafold
Jul 2021 - Nov 2023
Open source code for AlphaFold.
Contributions:49 pushes in 2 years 4 months
alphafold
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