Tung Nguyen
Freelance Software Engineer at EMBL-EBI
Cambridge, England, United Kingdom
Summary
👤
Senior🎓
Top SchoolTung Nguyen is a freelance Senior Software Engineer with 11 years of experience building cloud-native, scalable solutions for bioinformatics and research infrastructures. He spent over six years at EMBL-EBI modernizing BioModels: migrating legacy stacks to Kubernetes, trimming deployment times from 12 to 3 minutes, and building microservices in Spring Boot, Flask and FastAPI that integrate with HPC clusters. Tung combines strong OOP and backend skills (Java, Python, Maven, Redis, MongoDB) with front-end experience (React, Angular) and hands-on CI/CD expertise using GitLab and GitHub Actions. He has applied machine learning to automate model classification and worked extensively with domain standards (SBML, ontologies, RDF) to improve FAIR data workflows. Comfortable across research and production contexts, he routinely supports curators and collaborators to deliver large-scale data submissions and API-driven automation. Based in Cambridge, he pairs a PhD in bioinformatics with startup and teaching experience, bringing both academic rigor and user-focused pragmatism to engineering challenges.
11 years of coding experience
15 years of employment as a software developer
Doctor of Philosophy (Ph.D.) Bioinformatics, Doctor of Philosophy (Ph.D.) Bioinformatics at Université de BordeauxBachelor's Degree Computer Science, Bachelor's Degree Computer Science at Qui Nhon University
Vietnamese, English, French, Spanish
Stackoverflow
1,631reputation
606kreached
49answers
17questions
Github Skills (162)
web-application10
flask10
grails10
katakana10
groovy10
lingvo10
dictionary10
datepicker-dialog10
bootstrap10
rendering9
perfect9
javascript9
phylogeny9
html9
responsive9
Programming languages (10)
Github contributions (5)
EBI-BioModels/CombineExt
Nov 2021 - Nov 2024
some tools useful when working with COMBINE Archive
Contributions:1 release, 2 PRs, 14 pushes in 3 years
combine-archiveuseful-toolscombinearchivemimetype
EBI-BioModels/CombineArchive
May 2021 - Oct 2024
A Java Library to support the Combine Archive
Contributions:10 PRs, 30 pushes, 4 branches in 3 years 5 months
combine-archivejava-librarycombinearchivemerge
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