Vinay Swamy
PHD Student at Columbia University Irving Medical Center
New York, New York, United States
Summary
👤
Senior🎓
Top SchoolVinay Swamy is a PhD student in Biomedical Informatics at Columbia University with nine years of experience applying machine learning to biological problems, co-advised by Mohammed AlQuraishi and Raul Rabadan. His research spans biomolecular structure prediction, transcriptomic representation learning, and modeling high-throughput drug screens in glioblastoma, combining computational rigor with domain knowledge in genomics. He has built robust, scalable Snakemake pipelines for bulk, single-cell, and long-read RNA-seq at the NIH and teaches practical data visualization and ML workflows, reflecting strong pedagogy and reproducible-computing practices. Comfortable translating biology into production-ready analyses, he also designs interactive R-based workshops and custom computing environments to help others produce publication-quality figures.
8 years of coding experience
3 years of employment as a software developer
Bachelor of Science - BS, Biochemistry, Bachelor of Science - BS, Biochemistry at University of California, Los Angeles
Github Skills (61)
development-environment10
meta9
r9
million9
ide9
vscode9
grammar8
browser8
atlas8
data-visualisation8
seq8
typescript8
vscode-extension8
snakemake8
microsoft7
Programming languages (9)
Github contributions (5)
vinay-swamy/BIOF076-Visualization-with-R
Sep 2020 - Aug 2024
Contributions:15 releases, 42 pushes, 2 branches in 3 years 11 months
vinay-swamy/ocular_transcriptomes_pipeline
Oct 2018 - Sep 2021
Contributions:1 release, 313 commits, 2 PRs in 2 years 11 months
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