Vincentius Martin
Senior Bioinformatics Research Scientist
Pennsylvania, United States
Summary
👤
Senior🎓
Top SchoolVincentius Martin is a Senior Bioinformatics Research Scientist with 12 years of computational biology and software-focused experience, currently driving pediatric brain cancer research at St. Jude Children’s Research Hospital. He spent over two years at GSK building high-performance and semi-automated pipelines for single-cell and bulk omics and perturbation datasets to accelerate variant-to-function and oncology decision-making. His PhD in Computer Science from Duke fused database engineering with machine learning to model transcription factor–DNA interactions, producing quantitative insights into cooperativity and mutation effects on binding. Comfortable spanning production-ready data engineering and advanced statistical/AI modeling, he repeatedly integrates diverse assays (ChIP-seq, ATAC-seq, DNase-seq, PBM) into actionable outputs. Known for turning complex biological questions into efficient, reproducible pipelines, he blends academic rigor with industry-paced delivery.
12 years of coding experience
10 years of employment as a software developer
Doctor of Philosophy (Ph.D.), Computer Science, Doctor of Philosophy (Ph.D.), Computer Science at Duke UniversityBachelor of Engineering (B.E.), Computer Science, Bachelor of Engineering (B.E.), Computer Science at Institut Teknologi Bandung (ITB)St Angela, Bandung
English, Indonesian, Spanish
Github Skills (7)
binding9
prediction8
quantitative7
python5
pipeline2
bioinformatics2
genomics2
Programming languages (2)
Github contributions (5)
vincentiusmartin/chip2probe
Aug 2019 - Mar 2022
Contributions:1 PR, 121 pushes, 1 branch in 2 years 8 months
vincentiusmartin/QBiC-Pred
Sep 2018 - Feb 2020
Quantitative Binding Change Prediction
Contributions:11 commits, 8 PRs, 230 pushes in 1 year 5 months
pythonpredictionquantitativebinding
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