Vishal Koparde
Sr. Bioinformatics Manager
Glen Allen, Virginia, United States
Summary
👤
Senior🎓
Top SchoolVishal Koparde is a senior bioinformatics leader with over 15 years of experience architecting and delivering end-to-end genomics analysis pipelines for cancer research at the Frederick National Lab and NCI. He combines hands-on expertise in NGS methods (RNA‑seq, ChIP‑seq, WGS, single‑cell, spatial transcriptomics, CRISPR, etc.) with team leadership, Agile delivery and production-grade containerized workflows using Snakemake/Nextflow, Docker/Singularity, SLURM and cloud orchestrators. He oversees support for 200+ principal investigators, driving modernization, documentation and FAIR data practices while mentoring analysts and contributing to publications. Notably, he bridges wet-lab and clinical stakeholders to turn raw sequencing data into validated biological insight and has shepherded large-scale automation and cloud migrations for clinical and research pipelines.
13 years of coding experience
16 years of employment as a software developer
B.S. [B.Chem.], Chemical Engineering (UDCT), B.S. [B.Chem.], Chemical Engineering (UDCT) at University of MumbaiPhD., Chemical Engineering, PhD., Chemical Engineering at Vanderbilt University
perl, python, c, c++, html, r, bash, julia
Stackoverflow
11reputation
0reached
1answer
0questions
Github Skills (14)
rna-seq8
sqlite6
sql6
android6
chip-seq5
bioinformatics5
genomics5
genome5
annotations4
scalable2
ray1
parallel1
sequencing1
pipeline1
Programming languages (2)
Github contributions (5)
nisheth/meeptools
Feb 2015 - Apr 2016
Contributions:36 commits, 9 pushes, 3 branches in 1 year 2 months
kopardev/GAP
Feb 2015 - Dec 2015
Contributions:17 commits, 13 pushes, 1 branch in 10 months
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