Vlad Gainullin
Director Of Bioinformatics
Washington, District of Columbia, United States
Summary
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Senior🎓
Top SchoolVlad Gainullin is a Director of Bioinformatics with nine years of experience building ML-driven clinical genomics solutions, currently leading multidisciplinary teams at Exact Sciences to develop early-stage cancer diagnostic algorithms and SAMD-compliant software. He combines a PhD in Biochemistry/Genetics with an MS in Computer Science to bridge rigorous wet-lab genetics knowledge and production-grade ML/ML-Ops on Azure and Databricks. His work spans cfDNA and proteomics predictive models, confounding mitigation methods that improve generalizability across diverse patient cohorts, and reproducible data-science practices for regulated environments. Previously he advanced clinical WGS workflows and NLP for phenotype extraction at Illumina and GeneDx, and has a track record of automating model testing and deployment to ensure reliability in clinical settings. Not obvious from the title: he has hands-on experience with CRISPR model development and high-throughput variant classification from his postdoctoral work, informing his pragmatic approach to translational genomics.
9 years of coding experience
6 years of employment as a software developer
Doctor of Philosophy - PhD, Biochemistry, Genetics of Disease, Cancer, Doctor of Philosophy - PhD, Biochemistry, Genetics of Disease, Cancer at Mayo Clinic Graduate School of Biomedical SciencesMaster of Science - MS, Computer Science, Master of Science - MS, Computer Science at Georgia Institute of TechnologyBachelor of Science (BS), Medical Technology, Chemistry, Bachelor of Science (BS), Medical Technology, Chemistry at University of Wisconsin-Stevens Point
Stackoverflow
11reputation
167reached
0answers
1question
Github Skills (41)
extraction10
parsing10
similarity9
biomedical8
python8
information-retrieval8
binder8
bioinformatics8
semantic-similarity8
starcraft7
semantic7
nlp6
azure6
pandas6
pipeline5
Programming languages (3)
Github contributions (5)
GeneDx/txt2hpo
Oct 2019 - Mar 2021
Python library for extracting HPO encoded phenotypes from text
Contributions:7 releases, 1 review, 211 commits in 1 year 4 months
python-libraryextractionpythonencodedhpo
openbiosd/PrecisionFda-Test-App
Oct 2016 - Nov 2016
Contributions:24 pushes in 1 month
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