Wibowo Arindrarto
Senior Systems Engineer at one.com
Copenhagen, Capital Region of Denmark
Summary
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Rockstar🎓
Top SchoolWibowo Arindrarto is a Senior Systems Engineer based in Copenhagen with 15 years of experience building backend services, bioinformatics pipelines, and reproducible workflows for clinical and research genomics. He combines hands-on development in Python, Go, and Rust with DevOps leadership—driving IaC adoption, CI/CD, and Kubernetes-based deployments at national genome initiatives. A long-time open-source contributor, he has improved core tools like Snakemake (adding DRMAA logging and conda environment handling) and contributed bioinformatics algorithms to rust-bio and Snakemake wrappers for tools such as hisat2 and sickle. His background in biomedical science and a practical track record in diagnostic pipelines (including work that supported published studies) give him a rare cross-disciplinary fluency between computational infrastructure and domain requirements. Comfortable both architecting systems and writing the low-level parsing or CLI code they need, he often bridges gaps between researchers, operators, and software teams. He recently completed advanced CS studies at Georgia Tech, reinforcing his production experience with formal computer science training.
15 years of coding experience
12 years of employment as a software developer
Master of Science - MS Computer Science, Master of Science - MS Computer Science at Georgia Institute of TechnologyMaster of Science - M.Sc. Biomedical Science, Master of Science - M.Sc. Biomedical Science at Utrecht UniversitySarjana Sains - S.Si. (Bachelor's equivalent) Biotechnology, Sarjana Sains - S.Si. (Bachelor's equivalent) Biotechnology at Atma Jaya Catholic University of IndonesiaNatural science stream, Natural science stream at Canisius College (Kolese Kanisius)
English, Indonesian, Dutch, Danish
Stackoverflow
2,543reputation
262kreached
31answers
21questions
Github Skills (25)
rep10
snakemake10
python10
conda10
data-structure10
repr10
data-structures10
bioinformatics10
workflow-management10
rust10
wrapper10
devops10
algorithms9
shell8
sh8
Programming languages (13)
Github contributions (5)
snakemake/snakemake
Apr 2017 - Oct 2017
This is the development home of the workflow management system Snakemake. For general information, see
Role in this project:
DevOps Engineer
DevOps EngineerContributions:16 commits in 6 months
Contributions summary:Wibowo's contributions primarily center around enhancements to the Snakemake workflow management system related to cluster job execution and environment management. They added the `--drmaa-log-dir` flag, allowing users to specify a directory for DRMAA job output. Further work includes the setting of default values and modification of path handling for the `--drmaa-log-dir` parameter, along with changes related to conda environment management, including the creation and archiving of conda environments. These changes suggest a focus on improving workflow execution and environment reproducibility.
snakemakereproducibilityworkflow-management
snakemake/snakemake-wrappers
Jul 2016 - Nov 2016
This is the development home of the Snakemake wrapper repository, see
Role in this project:Backend Developer
Backend DeveloperContributions:9 commits in 4 months
Contributions summary:Wibowo contributed to the development of Snakemake wrappers, specifically for the `sickle` and `hisat2` tools. Their work involved creating and updating wrapper scripts, integrating the tools, and modifying the code to use new methods and fix redirection errors. This includes adding functionalities like parameter handling and logging within the Snakemake environment.
snakemake
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