Yan Hui
Postdoc at Københavns Universitet - University of Copenhagen
Copenhagen, Capital Region of Denmark
Summary
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Senior🎓
Top SchoolYan Hui is a postdoctoral bioinformatician at the University of Copenhagen with eight years’ experience in microbial genome assembly, shotgun metagenomics, amplicon sequencing and omics-clinical data integration. Fluent in R, Python, BASH and Snakemake, he builds and maintains automated workflows for ONT and WGS analysis (notably LACA, NART and ONTrapid) and contributes to community tools like Atlas. His work bridges high-performance bio-cloud computing and experimental studies, supporting clinical trials and animal models to interpret microbiome-targeted therapies such as probiotics, diets and FMT. He has a strong track record from industry (BGI) to academia, contributing to high-impact gut–brain axis and nutrition studies and to projects funded by Novo Nordisk Foundation. Pragmatic and hands-on, he combines pipeline engineering with statistical interpretation to turn complex sequencing data into actionable biological insight. Based in Copenhagen, he is also an active maintainer of online tutorials and open-source resources for microbiome analysis.
8 years of coding experience
1 year of employment as a software developer
Doctor of Philosophy - PhD, Microbiology, General, Doctor of Philosophy - PhD, Microbiology, General at Københavns Universitet - University of CopenhagenBachelor of Science - BS, Food Science, Bachelor of Science - BS, Food Science at China Agricultural University
Github Skills (44)
bioinformatics10
binning9
snakemake9
package-management9
assembly9
nmf9
autoencoder9
remote-development9
conda9
atlas9
variational-autoencoder9
metagenomics9
computational-biology8
docker8
workflow-management8
Programming languages (5)
Github contributions (5)
yanhui09/laca
Jan 2021 - Mar 2023
Contributions:507 commits, 238 pushes, 2 branches in 2 years 2 months
yanhui09/atlas
Sep 2021 - Aug 2023
ATLAS - Three commands to start analyzing your metagenome data
Contributions:28 pushes, 2 branches in 1 year 11 months
analyzingmetagenomeatlas
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