Yoshihiro Shibuya
Postdoctoral Researcher at Institut Pasteur
Paris, Ile-de-France
Summary
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Senior🎓
Top SchoolYoshihiro Shibuya is a postdoctoral researcher and bioinformatics engineer based in Paris with eight years of experience bridging computer engineering and biological data analysis. He holds a PhD in Bioinformatics and dual engineering degrees from the University of Padova, combining rigorous computational training with domain-focused research. At Institut Pasteur he develops algorithms and tools to streamline biologists’ workflows, drawing on a strong interest in new programming languages and paradigms. His work reflects a pragmatic researcher-developer mindset: solving real lab problems with reproducible, well-designed software rather than purely theoretical models. Fluent in both academic and software-engineering cultures, he is comfortable taking projects from prototype to usable tools that integrate into daily experimental practice.
8 years of coding experience
Laurea Magistrale LM, Ingegneria informatica, Computer Engineering, Laurea Magistrale LM, Ingegneria informatica, Computer Engineering at Università degli Studi di PadovaDoctor of Philosophy - PhD, Bioinformatics, Doctor of Philosophy - PhD, Bioinformatics at Université Paris-Est Marne-la-Vallée
Italian, English, French, Spanish
Github Skills (16)
tree-structure10
ncbi10
treeview10
phylogenetics9
mer9
visualization8
minhash8
taxonomy8
python7
hash7
api7
bioinformatics7
hash-functions6
hash-algorithm6
perfect4
Programming languages (2)
Github contributions (5)
yhhshb/yalff
Mar 2018 - Oct 2019
Contributions:1 release, 21 commits, 23 pushes in 1 year 7 months
yhhshb/biolib
Apr 2023 - Feb 2025
Contributions:2 PRs, 122 pushes, 4 branches in 1 year 10 months
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