Yoshitaka Inoue
Pre-Doctoral Research Training Award Fellow at The National Institutes of Health
Minneapolis, Minnesota, United States
Summary
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Senior🎓
Top SchoolYoshitaka Inoue is a Ph.D. candidate in Computer Science and Engineering at the University of Minnesota and a Pre-Doctoral Research Training Award Fellow at the National Institutes of Health, specializing in applying graph neural networks to biological networks for single-cell RNA imputation and drug response prediction. With 11 years of experience spanning academic research and industry, he blends deep computational skills—graph theory, GNNs, ML interpretability, and LLM interest—with domain knowledge in biology and metabolomics. He has applied machine learning in production settings (CTR modeling and recommendation systems) and contributed to open collaborative projects like Google Summer of Code pipelines for GNN-based drug response. His work is supported by NIH funding and guided by mentors at both the university and national research institutes, positioning him at the interface of in silico discovery and translational patient impact. Yoshitaka’s cross-cultural education from Japan to the U.S. and early experience in systems biology give him a distinctive ability to translate biological questions into rigorous computational solutions.
11 years of coding experience
5 years of employment as a software developer
Master's degree, Information Science/Studies, 3.8, Master's degree, Information Science/Studies, 3.8 at Nara Institute of Science and TechnologyDoctor of Philosophy - PhD, Computer Science, 4.0, Doctor of Philosophy - PhD, Computer Science, 4.0 at University of MinnesotaVisiting Scholar, Visiting Scholar at University of California, DavisBachelor of Science - BS, Biology/Biological Sciences, General, 3.0, Bachelor of Science - BS, Biology/Biological Sciences, General, 3.0 at Kumamoto University
Github Skills (172)
parallel10
batch-normalization10
python10
deep-learning10
gpu10
computational-biology10
backend10
gpu-acceleration10
r10
unicorns10
acceleration10
single-file10
autoencoder10
gradient10
numpy10
Programming languages (9)
Github contributions (5)
inoue0426/Cancer_cell_modeling_using_FBA
Mar 2019 - Mar 2022
Contributions:3 PRs, 11 pushes, 1 branch in 3 years
inoue0426/awesome-computational-biology
Feb 2022 - Dec 2022
Awesome list of computational biology.
Contributions:38 commits, 2 PRs, 49 pushes in 10 months
drug-discoverybiologydrug-repurposingmachine-learningbioinformatics
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