Yuan Xue
Senior Bioinformatics Scientist
Palo Alto, California, United States
Summary
👤
Senior🎓
Top SchoolYuan Xue is a bioinformatics scientist with 10 years of experience applying computational biology, machine learning, and quantitative modeling to develop non-invasive cancer diagnostics and optimize genomics assays. Based in Palo Alto, he combines a Stanford Bioengineering PhD and a strong experimental background—single-cell RNA-seq, enzyme kinetics, and assay development—with hands-on data science at ClearNote Health. His academic work produced 10+ publications, including first-author discoveries in antigenic variation and immune cell types, and the recombinant discovery of a cold-active DNA polymerase. Yuan is comfortable bridging wet-lab and computational teams, translating mechanistic insights into robust diagnostic pipelines. Less obvious: he has repeatedly led both computational and biochemical projects, giving him rare expertise in profiling enzyme kinetics alongside population-scale sequencing analyses.
10 years of coding experience
6 years of employment as a software developer
Molecular Biophysics, Molecular Biophysics at UT Southwestern Medical CenterDiocesan Boys' SchoolHigh School Diploma, High School Diploma at La Salle Catholic College PreparatoryBachelor of Arts (BA), Biology, Bachelor of Arts (BA), Biology at Reed CollegeDoctor of Philosophy - PhD, Bioengineering and Biomedical Engineering, Doctor of Philosophy - PhD, Bioengineering and Biomedical Engineering at Stanford University School of EngineeringDoctor of Philosophy (Ph.D.), Bioengineering, Doctor of Philosophy (Ph.D.), Bioengineering at Stanford University
Spanish, Japanese, Chinese, English
Github Skills (53)
mathjax8
uml8
firefox-webextension7
jupyter7
markdown7
bioinformatics7
gene-expression7
transcriptomics7
syntax-highlighting7
rna-seq7
jupyter-notebook7
vim6
css6
rna-velocity6
chrome-extension6
Programming languages (14)
Github contributions (5)
xuesoso/xuesoso.github.io
Mar 2019 - Mar 2026
Personal website for Soso Xue
Contributions:13 PRs, 189 pushes, 7 branches in 7 years
xuesoso/europa
Jul 2019 - Jul 2026
Send code to command line interpreter
Contributions:29 pushes, 1 branch in 7 years 1 month
command-line-interpreterinterpretercli
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