Yun Li
Staff Data Scientist
Taipei, Taiwan
Summary
👤
Senior🎓
Top SchoolYun Li is a Staff Data Scientist based in Taipei with 12 years of experience specializing in scalable NGS data analysis, distributed algorithms, and cloud-native bioinformatics systems. He combines deep domain expertise in bioinformatics C++ pipeline development with production-grade big data engineering—spark parallelization, NoSQL schema design for variant interpretation, and containerized GPU workflows across AWS/GCP. A former patent engineer turned entrepreneur, he co-founded CloudxDNA during graduate school and led technical transfers, patent work, and platform integrations, bringing a rare blend of IP strategy and hands-on engineering. At Atgenomix he architects distributed NGS second-analysis pipelines and onsite deployments, often optimizing cross-stack integrations from C++ tools to Spark and Dockerized GPU clusters. Known for pragmatic system design, he frequently bridges research-grade algorithms and robust production pipelines for clinical-scale genomics.
12 years of coding experience
10 years of employment as a software developer
Master's Degree, Biomathematics, Bioinformatics, and Computational Biology, Master's Degree, Biomathematics, Bioinformatics, and Computational Biology at National Chiao Tung UniversityBachelor's Degree, Electrical, Electronics and Communications Engineering, Bachelor's Degree, Electrical, Electronics and Communications Engineering at National Central University
English, Chinese
Github Skills (33)
genome8
genomics8
adam8
sequencing8
bioinformatics8
adapter6
genetic6
science5
illumina5
pipeline5
spark-ml5
spark4
apache-spark4
machine-learning4
deep-learning4
Programming languages (4)
Github contributions (5)
AnomeGAP/adam
May 2018 - Oct 2022
ADAM is a genomics analysis platform with specialized file formats built using Apache Avro, Apache Spark and Parquet. Apache 2 licensed.
Contributions:1 review, 2 PRs, 40 pushes in 4 years 5 months
avrolicensedpythonparquetfile-formats
obigbando/package_preparation
Oct 2015 - Dec 2015
Contributions:18 pushes, 4 branches in 2 months
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