Yunfei Guo
Principal Bioinformatics Scientist
Cambridge, Massachusetts, United States
Summary
👤
Senior🎓
Top SchoolYunfei Guo is a Principal Bioinformatics Scientist in Cambridge, MA with 11 years of experience applying rigorous biostatistics, HPC and software engineering to genomics and sequencing assay development. With a PhD in Biostatistics from USC, he has built production pipelines, web-based visualization tools, genome assemblies and fast indexing algorithms used in large-scale NGS analyses. At Roche he develops secondary sequencing analysis methods and text-mining workflows for biomedical literature, while also serving as an associate editor for Journal of Translational Medicine. Comfortable both in hands-on algorithm development and leading cross-functional projects, he pairs deep technical chops (Python/Perl/R, cluster administration) with public-speaking and leadership experience from Toastmasters. An often-overlooked strength is his focus on performance: he has delivered indexing and pipeline solutions that materially speed genomic data access and processing.
11 years of coding experience
5 years of employment as a software developer
Doctor of Philosophy (PhD) Biostatistics, Doctor of Philosophy (PhD) Biostatistics at University of Southern CaliforniaBachelor of Science (BS) Biological Sciences, Bachelor of Science (BS) Biological Sciences at Nanjing University
English, Chinese
Stackoverflow
1reputation
0reached
0answers
0questions
Github Skills (72)
slurm10
python10
genomics10
reproducible-science10
fastq-files10
singularity10
genome10
validation-framework10
sequencing10
data-analysis10
reproducible-research10
grammar10
fastq10
bioinformatics10
nextflow9
Programming languages (8)
Github contributions (5)
WGLab/SeqMule
Sep 2019 - Sep 2021
Automated human exome/genome variants detection from FASTQ files
Contributions:11 releases, 29 commits, 143 PRs in 2 years 1 month
fastq-filesgenomeexomefastqgenomics
yunfeiguo/bioinfo_toolbox
Dec 2016 - Jan 2020
Central location for my personal code, notes related to bioinformatics
Contributions:2 PRs, 198 pushes, 4 branches in 3 years 2 months
bioinformaticslocationnotescomputational-biology
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