Zhenfeng Liu
Bioinformatics Scientist & Bioinformatics Group Leader
Irvine, California, United States
Summary
👤
Senior🎓
Top SchoolZhenfeng Liu is a bioinformatics scientist and group leader with over a decade of experience translating omics data into production-ready pipelines and customer-facing tools. At Zymo Research he has built and scaled pipelines for RNA-seq, ChIP-seq, miRNA, 16S and shotgun metagenomics and led development of a no-code platform that lets customers run those analyses without scripting. His background spans academia and industry—from assembling dozens of bacterial genomes and pioneering metatranscriptome analyses at Penn State to running large-scale (>10 TB) RNA-seq projects and server infrastructure at USC. He combines hands-on pipeline engineering and database-building with statistical analysis and applied machine learning, and has co-led international team expansions to support R&D and operations. Author of 30+ publications, he maintains an active GitHub with reproducible projects and real-world ML work that complement his lab-to-production focus. Based in Irvine, CA, he often bridges customer needs and technical delivery, making complex bioinformatics accessible to non-specialists.
8 years of coding experience
13 years of employment as a software developer
Doctor of Philosophy - PhD, Biochemistry, Microbiology, and Molecular Biology, Doctor of Philosophy - PhD, Biochemistry, Microbiology, and Molecular Biology at Penn State UniversityBachelor of Science - BS, Biological Sciences, Bachelor of Science - BS, Biological Sciences at Peking UniversityData Science Career Track, Data Science Career Track at Springboard
Chinese, English
Github Skills (74)
genomics10
rna-seq10
fasta10
aggregate10
pypi10
fastq10
bioinformatics10
nextflow9
bioconda9
data-visualization9
python9
sequencing9
pipeline8
minhash8
reproducible-science8
Programming languages (10)
Github contributions (5)
Zymo-Research/aladdin-miqScoreShotgun
Sep 2023 - Feb 2025
Contributions:3 releases, 6 PRs, 4 pushes in 1 year 6 months
Zymo-Research/pipeline-resources
May 2021 - Jul 2022
Repository for resources and documentation files of Zymo bioinformatics pipelines
Contributions:2 reviews, 20 commits, 45 PRs in 1 year 2 months
pipelinesbioinformaticsgenomics
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