Zhixu Ni
Assistant Professor at Tsinghua Shenzhen International Graduate School
Shenzhen, Guangdong Province, China
Summary
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Senior🎓
Top SchoolZhixu Ni is an Assistant Professor at Tsinghua Shenzhen International Graduate School and a mass-spectrometry–driven lipidomics software developer with 11 years of experience bridging analytical chemistry and computational tools. He leads development of widely used tools such as LPPtiger2, LipidHunter2, and LipidLynxX that automate LC-MS/MS lipid identification, in silico epilipidome prediction, and cross‑annotation for systems-level lipidome integration. Trained with a summa cum laude PhD from Leipzig University, Zhixu combines deep domain expertise in MS-based lipidomics with practical software engineering to produce interactive, reproducible outputs (notably six‑panel HTML reports) that accelerate PRM experiment design and data sharing. His work uniquely focuses on turning complex spectra interpretation into user-friendly, interoperable pipelines that support pathway and network analyses in health and disease.
11 years of coding experience
7 years of employment as a software developer
Bachelor’s Degree, Pharmacy, Bachelor’s Degree, Pharmacy at Wuhan UniversityDoctor of Philosophy (Ph.D.), Mass spectrometry based lipidomics, summa cum laude, Doctor of Philosophy (Ph.D.), Mass spectrometry based lipidomics, summa cum laude at Leipzig University
Chinese, English, German
Github Skills (23)
health10
mass10
wakatime10
spectra10
bottom10
shotgun10
mass-spectrometry10
dynamics10
nomenclature10
bottom-up10
six10
counter10
bioinformatics10
network-analysis9
annotations9
Programming languages (4)
Github contributions (5)
ZhixuNi/ZhixuNi
Oct 2020 - Apr 2025
Contributions:1087 pushes, 1 branch in 4 years 6 months
ZhixuNi/LipidLynxX
Apr 2020 - Jan 2024
Contributions:2 PRs, 193 pushes, 14 branches in 3 years 9 months
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