Top Software Engineers in

Computational Genomics and Bioinformatics Workflow Development

Computational Genomics and Bioinformatics Workflow Development encompasses the application and development of computational workflows and tools to analyze genomic data. It leverages programming languages like Python and technologies such as Docker, Cloud, and various workflow engines to improve and automate the processing of DNA sequencing data, aiding in areas like variant calling, single-cell genomics, and more. Essential for advancing personalized medicine and understanding biological complexity, this field combines aspects of computer science, statistics, and biology.

Ranks are based on the open source contributions and reassessed every 30 days

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1

Bjorn Gruning
Scientific Researcher bei Universität Freiburg at Universitat Freiburg
/
Germany
Rock Star
17 years of coding experience
TOP CONTRIBUTIONS TO PROJECTS
bioconda/bioconda-recipes
Bioconda-recipes: 3188 commits in 7 years 1 months
bgruening/galaxytools
Galaxytools: 3034 commits in 10 years 1 months
galaxyproject/tools-iuc
Tools-iuc: 2930 commits in 9 years 5 months
Top skills
Score
conda
10
bioinformatics
10
package-management
10

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2

Andreas Sjödin
Senior Integration Developer at Calabrio Inc
/
Sweden
Rock Star
20 years of coding experience
TOP CONTRIBUTIONS TO PROJECTS
bioconda/bioconda-recipes
Bioconda-recipes: 1493 commits in 6 years 5 months
conda-forge/staged-recipes
Staged-recipes: 46 commits in 2 years 10 months
adrlar/CanSNPer
CanSNPer: 29 commits in 6 years 4 months
Top skills
Score
conda
10
package-management
10
bioinformatics
10

#

3

Ryan Dale
Scientific Information Officer & Bioinformatics Core Director at NIH/NICHD
/
United States
Rock Star
21 years of coding experience
TOP CONTRIBUTIONS TO PROJECTS
lcdb/lcdb-wf
Lcdb-wf: 1963 commits in 6 years 1 months
daler/pybedtools
Pybedtools: 1638 commits in 12 years 7 months
bioconda/bioconda-recipes
Bioconda-recipes: 1401 commits in 7 years 1 months
Top skills
Score
conda
10
package-management
10
bioinformatics
10

#

4

Johannes Köster
Research group leader at University of Duisburg-Essen
/
Germany
Rock Star
TOP CONTRIBUTIONS TO PROJECTS
snakemake/snakemake
Snakemake: 2679 commits in 9 years 6 months
bioconda/bioconda-recipes
Bioconda-recipes: 1327 commits in 7 years 5 months
varlociraptor/varlociraptor
Varlociraptor: 1178 commits in 6 years 7 months
Top skills
Score
conda
10
package-management
10
bioinformatics
10

#

5

Paolo Di Tommaso
CTO & Co-founder at Seqera Labs
/
Spain
Rock Star
14 years of coding experience
TOP CONTRIBUTIONS TO PROJECTS
nextflow-io/nextflow
Nextflow: 5657 commits in 9 years 11 months
seqeralabs/nf-tower
Nf-tower: 986 commits in 1 year 2 months
nextflow-io/website
Website: 396 commits in 8 years 10 months
Top skills
Score
bioinformatics
10
singularity
10
dataflow
10

#

6

Helena Rasche
/
Tanzania, United Republic of
Rock Star
12 years of coding experience
TOP CONTRIBUTIONS TO PROJECTS
galaxyproject/training-material
Training-material: 4723 commits in 5 years 8 months
TAMU-CPT/galaxy-tools
Galaxy-tools: 1352 commits in 3 years 2 months
erasche/galaxy
Galaxy: 939 commits in 7 years 8 months
Top skills
Score
metagenomics
10
rnaseq
10
materials
10

#

7

Elmar Pruesse
Bioinformatics Analyst at National Jewish Health
/
Germany
Rock Star
24 years of coding experience
TOP CONTRIBUTIONS TO PROJECTS
epruesse/ymp
Ymp: 1850 commits in 6 years 2 months
bioconda/bioconda-utils
Bioconda-utils: 1207 commits in 3 years 7 months
bioconda/bioconda-recipes
Bioconda-recipes: 1051 commits in 6 years
Top skills
Score
conda
10
package-management
10
bioinformatics
10

#

8

Devon Ryan
Head of scientific consulting, Selector business unit, Genedata AG at Genedata
/
Germany
Rock Star
24 years of coding experience
TOP CONTRIBUTIONS TO PROJECTS
deeptools/deepTools
DeepTools: 1545 commits in 5 years 4 months
bioconda/bioconda-recipes
Bioconda-recipes: 870 commits in 6 years 11 months
maxplanck-ie/snakepipes
Snakepipes: 692 commits in 2 years 10 months
Top skills
Score
conda
10
package-management
10
bioinformatics
10

#

9

Brad Chapman
Principal Data Science Architect at Ginkgo Bioworks, Inc.
/
United States
Rock Star
25 years of coding experience
TOP CONTRIBUTIONS TO PROJECTS
bcbio/bcbio-nextgen
Bcbio-nextgen: 5009 commits in 9 years 7 months
chapmanb/cloudbiolinux
Cloudbiolinux: 1752 commits in 11 years 5 months
chapmanb/bcbb
Bcbb: 1216 commits in 13 years 1 months
Top skills
Score
bioinformatics
10
package-management
10
conda
10

#

10

Saskia Hiltemann
Post-Doctoral Bioinformatician at Albert-Ludwigs-Universität Freiburg
/
Netherlands
Rock Star
13 years of coding experience
TOP CONTRIBUTIONS TO PROJECTS
galaxyproject/training-material
Training-material: 2990 commits in 6 years 4 months
shiltemann/CTF-writeups-public
CTF-writeups-public: 553 commits in 7 years 5 months
gallantries/video-library
Video-library: 545 commits in 1 year 2 months
Top skills
Score
metagenomics
10
chip-seq
10
rnaseq
10

#

11

Jillian Rowe
Bioinformatics Infrastructure Consultant. Deploy all the (Bioinformatics) Related Things! at Bioinformatics Infrastructure Consultant
/
United States
Rock Star
TOP CONTRIBUTIONS TO PROJECTS
bioconda/bioconda-recipes
Bioconda-recipes: 644 commits in 3 years 6 months
dabble-of-devops-bioanalyze/bioanalyze-docker-images
Bioanalyze-docker-images: 169 commits in 11 months
conda-forge/staged-recipes
Staged-recipes: 146 commits in 11 months
Top skills
Score
conda
10
bioinformatics
10
package-management
10

#

12

Christopher Tomkins-Tinch
Software Engineer at Broad Institute Of Mit And Harvard
/
United States
Rock Star
13 years of coding experience
TOP CONTRIBUTIONS TO PROJECTS
broadinstitute/viral-ngs
Viral-ngs: 1538 commits in 5 years 7 months
bioconda/bioconda-recipes
Bioconda-recipes: 598 commits in 7 years 1 months
broadinstitute/viral-pipelines
Viral-pipelines: 329 commits in 2 years 10 months
Top skills
Score
conda
10
package-management
10
bioinformatics
10

#

13

Adam Caprez
Associate Director of Research Development & Engagement at Holland Computing Center
/
United States
Rock Star
TOP CONTRIBUTIONS TO PROJECTS
unlhcc/hcc-conda-recipes
Hcc-conda-recipes: 1501 commits in 8 years 5 months
unlhcc/deployed-conda-envs
Deployed-conda-envs: 1391 commits in 4 years 10 months
unlhcc/hcc-modules
Hcc-modules: 1126 commits in 4 years 9 months
Top skills
Score
conda
10
bioinformatics
10
package-management
10

#

14

Christian Brueffer
Bioinformatics and Data Science Consultant / Freelancer / Contractor at Insilico Consulting
/
Sweden
Rock Star
21 years of coding experience
TOP CONTRIBUTIONS TO PROJECTS
freebsd/freebsd-src
Freebsd-src: 3850 commits in 19 years 6 months
dspinellis/unix-history-repo
Unix-history-repo: 2246 commits in 17 years 6 months
migueldeicaza/unix-history-repo
Unix-history-repo: 2225 commits in 13 years 2 months
Top skills
Score
conda-forge
10
recipes
3
forge
3

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15

Bérénice Batut
Researcher | Microbiome data analysis & Training at Open Life Science
/
France
Rock Star
14 years of coding experience
TOP CONTRIBUTIONS TO PROJECTS
galaxyproject/training-material
Training-material: 1853 commits in 6 years 6 months
ASaiM/framework
Framework: 1025 commits in 5 years 4 months
galaxyproject/tools-iuc
Tools-iuc: 809 commits in 6 years 11 months
Top skills
Score
metagenomics
10
rnaseq
10
materials
10

#

16

Andrew Butler
Employed at NEW YORK GENOME CENTER INC
/
United States
Rock Star
TOP CONTRIBUTIONS TO PROJECTS
satijalab/seurat
Seurat: 2553 commits in 6 years 10 months
satijalab/azimuth
Azimuth: 217 commits in 11 months
satijalab/seurat-wrappers
Seurat-wrappers: 81 commits in 2 years
Top skills
Score
single-cell-genomics
10
cran
10
genomics
2

#

17

Paul Hoffman
Software Engineer at TileDB
/
United States
Rock Star
13 years of coding experience
TOP CONTRIBUTIONS TO PROJECTS
satijalab/seurat
Seurat: 2334 commits in 5 years 8 months
mojaveazure/seurat-object
Seurat-object: 523 commits in 2 years 4 months
mojaveazure/angsd-wrapper
Angsd-wrapper: 272 commits in 1 year 1 months
Top skills
Score
single-cell-genomics
10
cran
10
bioinformatics
2

#

18

Arne Kratz
Civilingeniør
/
Denmark
Rock Star
TOP CONTRIBUTIONS TO PROJECTS
bioconda/bioconda-recipes
Bioconda-recipes: 375 commits in 3 years 4 months
bioconda/bioconda-utils
Bioconda-utils: 6 commits in 3 days
conda-forge/staged-recipes
Staged-recipes: 5 commits in 6 months
Top skills
Score
conda
10
bioinformatics
10
package-management
10

#

19

Anthony Bretaudeau
Employed at BIPAA/GenOuest
/
France
Rock Star
13 years of coding experience
TOP CONTRIBUTIONS TO PROJECTS
galaxyproject/tools-iuc
Tools-iuc: 559 commits in 7 years 2 months
galaxy-genome-annotation/galaxy-tools
Galaxy-tools: 300 commits in 6 years 3 months
bioconda/bioconda-recipes
Bioconda-recipes: 299 commits in 6 years 10 months
Top skills
Score
bioinformatics
10
package-management
10
conda
10

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